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publicly available microarray data  (Schmid GmbH)

 
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    Schmid GmbH publicly available microarray data
    HS-dependent changes for 25 Ca 2+ -signaling related genes. Graph shows selected examples of HS-dependent log2-fold abundance changes for transcript encoded by 25 genes related to Ca 2+ -signaling. The 25 examples were selected as the most statistically significant changes in WT pollen (open bar) based on adjusted p- values. Corresponding transcript abundances from cngc16 mutant (grey bar) and aerial parts of seedlings (black bar) are shown for comparison. HS-dependent changes in transcript abundance in seedlings (aerial parts) was based on . Complete list of Ca 2+ -related genes with putative functions (total 230) is provided in Additional file . CHXs are cation/H + -exchangers. CBLDs are Ca 2+ -dependent lipid-binding (CaLB domain) family protein. SLP is Calcineurin-like metallo-phosphoesterase superfamily protein. CRTs are calreticulins. ACA is autoinhibited Ca 2+ -ATPase pump. CAMs are calmodulins. CML is calmodulin like. CNGC is cyclic nucleotide gated channel. CPKs are Ca 2+ -dependent protein kinases. CBN is Ca 2+ -binding endonuclease/exonuclease/phosphatase family. CBL is calcineurin B subunit-like protein. CIPK is calcineurin B-like (CBL)-interacting protein kinase. CAX is cation exchanger. * indicates absence of probeset in <t>microarray</t> experiment
    Publicly Available Microarray Data, supplied by Schmid GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/publicly+available+microarray+data/publicly+available+microarray+data/pmc06057101-409-61-68
    Average 90 stars, based on 1 article reviews
    publicly available microarray data - by Bioz Stars, 2026-10
    90/100 stars

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    1) Product Images from "A comparison of heat-stress transcriptome changes between wild-type Arabidopsis pollen and a heat-sensitive mutant harboring a knockout of cyclic nucleotide-gated cation channel 16 ( cngc16 )"

    Article Title: A comparison of heat-stress transcriptome changes between wild-type Arabidopsis pollen and a heat-sensitive mutant harboring a knockout of cyclic nucleotide-gated cation channel 16 ( cngc16 )

    Journal: BMC Genomics

    doi: 10.1186/s12864-018-4930-4

    HS-dependent changes for 25 Ca 2+ -signaling related genes. Graph shows selected examples of HS-dependent log2-fold abundance changes for transcript encoded by 25 genes related to Ca 2+ -signaling. The 25 examples were selected as the most statistically significant changes in WT pollen (open bar) based on adjusted p- values. Corresponding transcript abundances from cngc16 mutant (grey bar) and aerial parts of seedlings (black bar) are shown for comparison. HS-dependent changes in transcript abundance in seedlings (aerial parts) was based on . Complete list of Ca 2+ -related genes with putative functions (total 230) is provided in Additional file . CHXs are cation/H + -exchangers. CBLDs are Ca 2+ -dependent lipid-binding (CaLB domain) family protein. SLP is Calcineurin-like metallo-phosphoesterase superfamily protein. CRTs are calreticulins. ACA is autoinhibited Ca 2+ -ATPase pump. CAMs are calmodulins. CML is calmodulin like. CNGC is cyclic nucleotide gated channel. CPKs are Ca 2+ -dependent protein kinases. CBN is Ca 2+ -binding endonuclease/exonuclease/phosphatase family. CBL is calcineurin B subunit-like protein. CIPK is calcineurin B-like (CBL)-interacting protein kinase. CAX is cation exchanger. * indicates absence of probeset in microarray experiment
    Figure Legend Snippet: HS-dependent changes for 25 Ca 2+ -signaling related genes. Graph shows selected examples of HS-dependent log2-fold abundance changes for transcript encoded by 25 genes related to Ca 2+ -signaling. The 25 examples were selected as the most statistically significant changes in WT pollen (open bar) based on adjusted p- values. Corresponding transcript abundances from cngc16 mutant (grey bar) and aerial parts of seedlings (black bar) are shown for comparison. HS-dependent changes in transcript abundance in seedlings (aerial parts) was based on . Complete list of Ca 2+ -related genes with putative functions (total 230) is provided in Additional file . CHXs are cation/H + -exchangers. CBLDs are Ca 2+ -dependent lipid-binding (CaLB domain) family protein. SLP is Calcineurin-like metallo-phosphoesterase superfamily protein. CRTs are calreticulins. ACA is autoinhibited Ca 2+ -ATPase pump. CAMs are calmodulins. CML is calmodulin like. CNGC is cyclic nucleotide gated channel. CPKs are Ca 2+ -dependent protein kinases. CBN is Ca 2+ -binding endonuclease/exonuclease/phosphatase family. CBL is calcineurin B subunit-like protein. CIPK is calcineurin B-like (CBL)-interacting protein kinase. CAX is cation exchanger. * indicates absence of probeset in microarray experiment

    Techniques Used: Mutagenesis, Comparison, Binding Assay, Microarray

    Related Articles

    Mutagenesis:

    Article Title: A comparison of heat-stress transcriptome changes between wild-type Arabidopsis pollen and a heat-sensitive mutant harboring a knockout of cyclic nucleotide-gated cation channel 16 ( cngc16 )
    Article Snippet: .. Differentially expressed transcription factors (TFs) are organized to show HS-dependent differences that are WT-specific (23 changes, yellow highlight), cngc16 -specific (98 changes, blue highlight), or common to both mutant and WT (66 changes, white highlight). a A comparison is provided to HS-dependent changes observed for aerial parts of seedlings exposed to a one hour 38 °C HS based on publicly available microarray data in AtGenExpress, ( http://jsp.weigelworld.org/expviz/expviz.jsp ; Schmid et al. 2005 (PMID: 15806101 [ ]). ..

    Comparison:

    Article Title: A comparison of heat-stress transcriptome changes between wild-type Arabidopsis pollen and a heat-sensitive mutant harboring a knockout of cyclic nucleotide-gated cation channel 16 ( cngc16 )
    Article Snippet: .. Differentially expressed transcription factors (TFs) are organized to show HS-dependent differences that are WT-specific (23 changes, yellow highlight), cngc16 -specific (98 changes, blue highlight), or common to both mutant and WT (66 changes, white highlight). a A comparison is provided to HS-dependent changes observed for aerial parts of seedlings exposed to a one hour 38 °C HS based on publicly available microarray data in AtGenExpress, ( http://jsp.weigelworld.org/expviz/expviz.jsp ; Schmid et al. 2005 (PMID: 15806101 [ ]). ..

    Microarray:

    Article Title: A comparison of heat-stress transcriptome changes between wild-type Arabidopsis pollen and a heat-sensitive mutant harboring a knockout of cyclic nucleotide-gated cation channel 16 ( cngc16 )
    Article Snippet: .. Differentially expressed transcription factors (TFs) are organized to show HS-dependent differences that are WT-specific (23 changes, yellow highlight), cngc16 -specific (98 changes, blue highlight), or common to both mutant and WT (66 changes, white highlight). a A comparison is provided to HS-dependent changes observed for aerial parts of seedlings exposed to a one hour 38 °C HS based on publicly available microarray data in AtGenExpress, ( http://jsp.weigelworld.org/expviz/expviz.jsp ; Schmid et al. 2005 (PMID: 15806101 [ ]). ..



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    publicly available microarray data  (Schmid GmbH)
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    Schmid GmbH publicly available microarray data
    HS-dependent changes for 25 Ca 2+ -signaling related genes. Graph shows selected examples of HS-dependent log2-fold abundance changes for transcript encoded by 25 genes related to Ca 2+ -signaling. The 25 examples were selected as the most statistically significant changes in WT pollen (open bar) based on adjusted p- values. Corresponding transcript abundances from cngc16 mutant (grey bar) and aerial parts of seedlings (black bar) are shown for comparison. HS-dependent changes in transcript abundance in seedlings (aerial parts) was based on . Complete list of Ca 2+ -related genes with putative functions (total 230) is provided in Additional file . CHXs are cation/H + -exchangers. CBLDs are Ca 2+ -dependent lipid-binding (CaLB domain) family protein. SLP is Calcineurin-like metallo-phosphoesterase superfamily protein. CRTs are calreticulins. ACA is autoinhibited Ca 2+ -ATPase pump. CAMs are calmodulins. CML is calmodulin like. CNGC is cyclic nucleotide gated channel. CPKs are Ca 2+ -dependent protein kinases. CBN is Ca 2+ -binding endonuclease/exonuclease/phosphatase family. CBL is calcineurin B subunit-like protein. CIPK is calcineurin B-like (CBL)-interacting protein kinase. CAX is cation exchanger. * indicates absence of probeset in <t>microarray</t> experiment
    Publicly Available Microarray Data, supplied by Schmid GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/publicly+available+microarray+data/publicly+available+microarray+data/pmc06057101-409-61-68
    Average 90 stars, based on 1 article reviews
    publicly available microarray data - by Bioz Stars, 2026-10
    90/100 stars
    		  Buy from Supplier

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    HS-dependent changes for 25 Ca 2+ -signaling related genes. Graph shows selected examples of HS-dependent log2-fold abundance changes for transcript encoded by 25 genes related to Ca 2+ -signaling. The 25 examples were selected as the most statistically significant changes in WT pollen (open bar) based on adjusted p- values. Corresponding transcript abundances from cngc16 mutant (grey bar) and aerial parts of seedlings (black bar) are shown for comparison. HS-dependent changes in transcript abundance in seedlings (aerial parts) was based on . Complete list of Ca 2+ -related genes with putative functions (total 230) is provided in Additional file . CHXs are cation/H + -exchangers. CBLDs are Ca 2+ -dependent lipid-binding (CaLB domain) family protein. SLP is Calcineurin-like metallo-phosphoesterase superfamily protein. CRTs are calreticulins. ACA is autoinhibited Ca 2+ -ATPase pump. CAMs are calmodulins. CML is calmodulin like. CNGC is cyclic nucleotide gated channel. CPKs are Ca 2+ -dependent protein kinases. CBN is Ca 2+ -binding endonuclease/exonuclease/phosphatase family. CBL is calcineurin B subunit-like protein. CIPK is calcineurin B-like (CBL)-interacting protein kinase. CAX is cation exchanger. * indicates absence of probeset in microarray experiment

    Journal: BMC Genomics

    Article Title: A comparison of heat-stress transcriptome changes between wild-type Arabidopsis pollen and a heat-sensitive mutant harboring a knockout of cyclic nucleotide-gated cation channel 16 ( cngc16 )

    doi: 10.1186/s12864-018-4930-4

    Figure Lengend Snippet: HS-dependent changes for 25 Ca 2+ -signaling related genes. Graph shows selected examples of HS-dependent log2-fold abundance changes for transcript encoded by 25 genes related to Ca 2+ -signaling. The 25 examples were selected as the most statistically significant changes in WT pollen (open bar) based on adjusted p- values. Corresponding transcript abundances from cngc16 mutant (grey bar) and aerial parts of seedlings (black bar) are shown for comparison. HS-dependent changes in transcript abundance in seedlings (aerial parts) was based on . Complete list of Ca 2+ -related genes with putative functions (total 230) is provided in Additional file . CHXs are cation/H + -exchangers. CBLDs are Ca 2+ -dependent lipid-binding (CaLB domain) family protein. SLP is Calcineurin-like metallo-phosphoesterase superfamily protein. CRTs are calreticulins. ACA is autoinhibited Ca 2+ -ATPase pump. CAMs are calmodulins. CML is calmodulin like. CNGC is cyclic nucleotide gated channel. CPKs are Ca 2+ -dependent protein kinases. CBN is Ca 2+ -binding endonuclease/exonuclease/phosphatase family. CBL is calcineurin B subunit-like protein. CIPK is calcineurin B-like (CBL)-interacting protein kinase. CAX is cation exchanger. * indicates absence of probeset in microarray experiment

    Article Snippet: Differentially expressed transcription factors (TFs) are organized to show HS-dependent differences that are WT-specific (23 changes, yellow highlight), cngc16 -specific (98 changes, blue highlight), or common to both mutant and WT (66 changes, white highlight). a A comparison is provided to HS-dependent changes observed for aerial parts of seedlings exposed to a one hour 38 °C HS based on publicly available microarray data in AtGenExpress, ( http://jsp.weigelworld.org/expviz/expviz.jsp ; Schmid et al. 2005 (PMID: 15806101 [ ]).

    Techniques: Mutagenesis, Comparison, Binding Assay, Microarray